---
title: "Innate Immunity and Inflammation"
book: "University Biology — Year 3"
subject: biology
language: en
chapter: 15
exercises: 12
source: https://one-course.com/books/biology/5/en/chapter/15-innate-immunity-and-inflammation
---

# Chapter 15 — Innate Immunity and Inflammation

A splinter under the skin carries in ten thousand bacteria that will double every half hour. Within minutes the vessels around it dilate and leak; within an hour the first [neutrophils](#def-b3-innate-immunity-innate) have squeezed out of the blood and are crawling toward the intruders along a chemical trail; within a day the site is red, hot, swollen and painful — the four signs of [inflammation](#def-b3-innate-immunity-inflammation) that Celsus listed two thousand years ago — and the bacteria are dead, eaten alive by cells that recognised them as foreign without ever having met them before. This is [innate immunity](#def-b3-innate-immunity-innate): the defence every animal has, ready before infection, encoded in the genome rather than learned. It is fast, it is what kills most invaders, and it is what tells the slower, learned immunity of the next chapter that there is something to learn. Its excesses — septic shock, chronic [inflammation](#def-b3-innate-immunity-inflammation), the fevers of autoinflammatory disease — are as instructive as its successes.

## 15.1 Layers and cells

**Definition 15.1 (Innate immunity).**

*Innate immunity* is the set of defences present before any exposure, encoded by germline genes that do not rearrange, recognising conserved features of microbes rather than specific individuals, acting within minutes to hours, and (with qualifications) without memory. Its first layer is the *barriers*: the skin’s keratin, the mucus and cilia of the airways, the acid of the stomach, the flushing of urine and tears, the enzyme lysozyme that cuts [peptidoglycan](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope), the *antimicrobial peptides* (defensins, cathelicidins) that puncture microbial membranes, and the commensal [microbiome](https://one-course.com/books/biology/5/en/chapter/14-microbiomes-and-symbioses#def-b3-microbiomes-symbiosis) that occupies the niches ([Chapter 14](https://one-course.com/books/biology/5/en/chapter/14-microbiomes-and-symbioses#ch-b3-microbiomes)). Its cells, all from the myeloid lineage except the last: *neutrophils*, $60\,\%$ of the blood’s leukocytes, $10^{11}$ made a day, living a day, the first to arrive and the main killers of bacteria; *macrophages*, long-lived residents of every tissue (Kupffer cells in the liver, microglia in the brain, alveolar macrophages in the lung) that eat, clean up and raise the alarm; *dendritic cells*, which sample tissues and carry what they find to the lymph nodes; mast cells, basophils and eosinophils, armed against parasites and responsible for allergy; and *natural killer* (NK) cells, lymphocytes that kill infected or transformed cells on sight.

**Evidence.** Metchnikoff (1882), in Messina, pushed a rose thorn into a transparent starfish larva and watched, the next morning, motile cells crowding round it; he had seen the same cells engulf food particles and dye grains, and proposed that they engulfed microbes too — *phagocytes*, the agents of a host defence he then traced in every animal he could find, from amoebae to man. He shared the Nobel prize of 1908 with Ehrlich, whose antibodies represented the opposite, humoral view; both were right, and a century later the two halves of immunity were shown to be one system, the innate half instructing the adaptive. ∎

![Élie Metchnikoff, who watched phagocytes gather round a thorn in a starfish larva and founded cellular immunology (Library of Congress, public domain). Centre: a neutrophil engulfing bacteria. Right: a macrophage spreading its ruffled membranes over a surface.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/img-880cfa2c7ed6.jpg)

![Élie Metchnikoff, who watched phagocytes gather round a thorn in a starfish larva and founded cellular immunology (Library of Congress, public domain). Centre: a neutrophil engulfing bacteria. Right: a macrophage spreading its ruffled membranes over a surface.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/img-795f0bd2a697.jpg)

![Élie Metchnikoff, who watched phagocytes gather round a thorn in a starfish larva and founded cellular immunology (Library of Congress, public domain). Centre: a neutrophil engulfing bacteria. Right: a macrophage spreading its ruffled membranes over a surface.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/img-231c7ecd6076.jpg)

*Élie Metchnikoff, who watched phagocytes gather round a thorn in a starfish larva and founded cellular immunology (Library of Congress, public domain). Centre: a [neutrophil](#def-b3-innate-immunity-innate) engulfing bacteria. Right: a [macrophage](#def-b3-innate-immunity-innate) spreading its ruffled membranes over a surface.*

## 15.2 Recognising the enemy

**Definition 15.2 (Pattern recognition).**

Innate cells recognise *pathogen-associated molecular patterns* (PAMPs): molecules common to whole classes of microbes, essential to them, and absent from the host — [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) of [Gram-negative](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) walls, [peptidoglycan](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) and lipoteichoic acid of [Gram-positives](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope), flagellin, fungal $\beta$-glucans, double-stranded RNA, RNA without a 5$'$ cap, DNA with unmethylated [CpG](https://one-course.com/books/biology/5/en/chapter/1-chromatin-and-epigenetics#def-b3-chromatin-epigenetics-methylation), DNA in the cytosol. The receptors are *pattern recognition receptors* (PRRs), a few dozen in all, each encoded by one gene: the *Toll-like receptors* (TLRs) on the surface and in [endosomes](https://one-course.com/books/biology/5/en/chapter/8-membrane-traffic-and-protein-sorting#def-b3-membrane-traffic-endocytosis) (TLR4 for [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope), TLR5 for flagellin, TLR3 for double-stranded RNA, TLR9 for [CpG](https://one-course.com/books/biology/5/en/chapter/1-chromatin-and-epigenetics#def-b3-chromatin-epigenetics-methylation) DNA); the cytosolic NOD proteins for [peptidoglycan](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) fragments, RIG-I for viral RNA, cGAS–STING for cytosolic DNA; C-type lectins for fungal sugars. The same receptors, or others of the same families, recognise *damage-associated molecular patterns* (DAMPs) released by injured cells — ATP, uric acid, the nuclear protein HMGB1, mitochondrial DNA — so that sterile injury also inflames. Binding activates the transcription factors NF-$\kappa$B and the interferon regulatory factors, which switch on [cytokines](#def-b3-innate-immunity-inflammation), [chemokines](#def-b3-innate-immunity-inflammation), adhesion molecules and antimicrobial genes within an hour; a subset of the cytosolic sensors assemble the *inflammasome*, a platform that activates caspase-1 to cut interleukin-1$\beta$ into its active form and to trigger the inflammatory death called [pyroptosis](https://one-course.com/books/biology/5/en/chapter/10-cell-cycle-control-and-programmed-cell-death#def-b3-cell-cycle-apoptosis-other) ([Chapter 10](https://one-course.com/books/biology/5/en/chapter/10-cell-cycle-control-and-programmed-cell-death#ch-b3-cell-cycle-apoptosis)).

**Evidence.** Janeway proposed in 1989 that the adaptive immune system does not respond to antigen alone but needs a signal from innate receptors that have recognised microbial patterns — the explanation of why vaccines need adjuvants, “the immunologist’s dirty little secret”. Hoffmann (1996) found that *Drosophila* lacking the receptor Toll, known for its role in embryonic patterning, could not mount an antifungal response and died covered in mould; Beutler (1998) mapped the lipopolysaccharide-resistance of a mouse strain, which survived doses of endotoxin lethal to others and failed to clear [Gram-negative](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) infections, to a mutation in the mammalian homologue TLR4. The receptor for endotoxin, sought for fifty years, was a Toll. ∎

![Three arms of pattern recognition. A surface Toll-like receptor bound by lipopolysaccharide signals through NF-B to the inflammatory cytokines; cytosolic sensors of viral nucleic acid induce interferon; the inflammasome turns the stored precursor of interleukin-1 into the active cytokine.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/fig-d8b597a65b43.svg)

*Three arms of pattern recognition. A surface [Toll-like receptor](#def-b3-innate-immunity-prr) bound by [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) signals through NF-$\kappa$B to the inflammatory [cytokines](#def-b3-innate-immunity-inflammation); cytosolic sensors of viral nucleic acid induce interferon; the [inflammasome](#def-b3-innate-immunity-prr) turns the stored precursor of interleukin-1 into the active [cytokine](#def-b3-innate-immunity-inflammation).*

**Definition 15.3 (Complement).**

*Complement* is a system of some thirty plasma proteins, $10\,\%$ of the serum globulins, that marks and destroys microbes by a cascade of proteolytic activations. Three pathways converge on the cleavage of the central protein C3: the *classical* pathway, started by C1q binding antibodies on a surface (or [C-reactive protein](#prop-b3-innate-immunity-systemic), or apoptotic cells); the *lectin* pathway, started by mannose-binding lectin recognising microbial sugars; and the *alternative* pathway, in which C3 hydrolyses spontaneously at a low rate and the resulting C3b attaches to any surface it meets. Each pathway builds a *C3 convertase*, an enzyme that cleaves more C3; the C3b it deposits covalently on the surface builds more convertase in turn — an amplification loop — so that a bacterium is coated with millions of C3b within minutes. C3b is an *opsonin*: phagocytes carry receptors for it and eat what it coats. The small fragments C3a and C5a are *anaphylatoxins* that dilate vessels, attract [neutrophils](#def-b3-innate-immunity-innate) and activate mast cells. And C5b assembles C6–C9 into the *membrane attack complex*, a pore of $10\,\mathrm{nm}$ that lyses [Gram-negative](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) bacteria and enveloped viruses. Host cells are spared because they carry regulators — factor H, CD55, CD59 — that dismantle the convertase and block the pore on their own surfaces; microbes, lacking them, are consumed by the loop.

**Theorem 15.4 (The complement loop as a kinetic discriminator).**

Let $B(t)$ be the number of C3b molecules deposited on a surface. C3b is deposited at a small constant rate $k_{0}$ from the tick-over of C3, and each deposited C3b builds convertase that deposits more at rate $a$ per C3b per second, while regulators (host) and decay remove convertase activity at rate $d$ per C3b per second:

$$
\frac{\mathrm{d}B}{\mathrm{d}t} = k_{0} + (a - d)\,B .
$$

On a surface where $a > d$ — a microbe, without regulators — $B(t) = \bigl[k_{0}/(a-d)\bigr]\bigl(e^{(a-d)t} - 1\bigr)$ grows exponentially with time constant $1/(a - d)$; on a host surface where $d > a$, $B$ approaches the small steady value $k_{0}/(d - a)$. The same molecules, at the same concentrations, deposit a million C3b on a bacterium in a few minutes and a few dozen on the cell beside it: the distinction between self and non-self is made not by recognition but by the sign of $a - d$.

**Proof.** The equation is linear with constant coefficients. For $a \ne d$ the fixed point is $B^{*} = -k_{0}/(a-d)$; writing $B = B^{*} + u$, $\mathrm{d}u/\mathrm{d}t = (a-d)u$, so $u = u_{0}e^{(a-d)t}$ and with $B(0) = 0$, $B(t) = \bigl[k_{0}/(a-d)\bigr](e^{(a-d)t} - 1)$. For $a > d$ this grows without bound (until C3 or surface runs out); for $a < d$ the exponential decays and $B \to k_{0}/(d-a) > 0$. With $k_{0} = 1$ per second, $a - d = 0.1\,\mathrm{s}^{-1}$ on a bacterium, $B(2\,\mathrm{min})
= 10(e^{12} - 1) \approx 1.6\times 10^{6}$; with $d - a =
0.1\,\mathrm{s}^{-1}$ on a host cell, $B^{*} = 10$. ∎

![The complement loop on two surfaces with k_0 = 1 per second and |a - d| = 0.1\, s-1: on a microbe lacking regulators C3b grows exponentially and reaches a million in two minutes; on a host cell with regulators it levels off at ten.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/fig-69602186745e.svg)

*The [complement](#def-b3-innate-immunity-complement) loop on two surfaces with $k_{0} = 1$ per second and $|a - d| = 0.1\,\mathrm{s}^{-1}$: on a microbe lacking regulators C3b grows exponentially and reaches a million in two minutes; on a host cell with regulators it levels off at ten.*

![Complement. Three routes build a C3 convertase; the C3b it deposits builds more (the loop of the theorem), and the deposited C3b opsonises, the fragments inflame, and the terminal complex lyses. Host cells carry regulators that cut the loop (and, with CD59, block the pore) on their own membranes.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/fig-ed9ed7c13294.svg)

*[Complement](#def-b3-innate-immunity-complement). Three routes build a [C3 convertase](#def-b3-innate-immunity-complement); the C3b it deposits builds more (the loop of the theorem), and the deposited C3b opsonises, the fragments inflame, and the terminal complex lyses. Host cells carry regulators that cut the loop (and, with CD59, block the pore) on their own membranes.*

## 15.3 Inflammation

**Definition 15.5 (Acute inflammation).**

*Inflammation* is the response of vascularised tissue to injury or infection, orchestrated by *cytokines* — the small signalling proteins of immune cells, here chiefly TNF, interleukin-1 and interleukin-6 from activated [macrophages](#def-b3-innate-immunity-innate) — and by *chemokines*, the cytokines that direct migration. Its steps explain Celsus’s signs. Histamine from mast cells, nitric oxide and prostaglandins dilate the arterioles: *redness* and *heat*. The endothelium of the venules contracts and leaks plasma, whose proteins — [complement](#def-b3-innate-immunity-complement), antibodies, clotting factors — flood the tissue: *swelling*. Bradykinin and prostaglandin E$_{2}$ sensitise nerve endings: *pain*. And the leukocytes arrive by *extravasation*: TNF and interleukin-1 make the endothelium display *selectins*, on which passing [neutrophils](#def-b3-innate-immunity-innate) catch and roll; chemokines (interleukin-8) on the endothelial surface activate the [neutrophils](#def-b3-innate-immunity-innate)’ *integrins*, which bind tightly to endothelial adhesion molecules and stop the cell; and the [neutrophil](#def-b3-innate-immunity-innate) squeezes between the endothelial cells and follows the chemokine gradient into the tissue — the whole sequence in a few minutes, at up to a million cells an hour into an infected site.

![Extravasation. Cytokines from tissue macrophages make the venule wall sticky; a passing neutrophil catches on selectins and rolls, is stopped by its integrins, squeezes between endothelial cells, and follows the chemokine gradient to the bacteria.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/fig-9b92fced9073.svg)

*[Extravasation](#def-b3-innate-immunity-inflammation). [Cytokines](#def-b3-innate-immunity-inflammation) from tissue [macrophages](#def-b3-innate-immunity-innate) make the venule wall sticky; a passing [neutrophil](#def-b3-innate-immunity-innate) catches on [selectins](#def-b3-innate-immunity-inflammation) and rolls, is stopped by its [integrins](#def-b3-innate-immunity-inflammation), squeezes between endothelial cells, and follows the [chemokine](#def-b3-innate-immunity-inflammation) gradient to the bacteria.*

**Proposition 15.6 (Fever, the acute phase and resolution).**

Interleukin-1, TNF and interleukin-6 also act at a distance. In the hypothalamus they induce prostaglandin E$_{2}$, which raises the set point of body temperature: *fever*, which slows many bacteria, speeds the immune cells’ own reactions, and costs about $12\,\%$ more metabolism per degree. In the liver they induce the *acute-phase proteins* — [C-reactive protein](#prop-b3-innate-immunity-systemic), which binds bacterial phosphocholine and activates [complement](#def-b3-innate-immunity-complement) and rises a thousandfold within two days, the clinician’s measure of [inflammation](#def-b3-innate-immunity-inflammation); fibrinogen; mannose-binding lectin; and hepcidin, which locks iron away from the microbes that need it. In the marrow they release [neutrophils](#def-b3-innate-immunity-innate) and speed their production. [Inflammation](#def-b3-innate-immunity-inflammation) is meant to end: as the stimulus is cleared, the lipid mediators switch from prostaglandins to lipoxins and resolvins, [neutrophils](#def-b3-innate-immunity-innate) die by [apoptosis](https://one-course.com/books/biology/5/en/chapter/10-cell-cycle-control-and-programmed-cell-death#def-b3-cell-cycle-apoptosis-apoptosis) and are eaten by [macrophages](#def-b3-innate-immunity-innate), which then switch to a repair programme, secreting growth factors and interleukin-10 — *resolution*. When the stimulus persists (a tubercle bacillus that cannot be killed, a crystal, a self-antigen) the response becomes chronic: [macrophages](#def-b3-innate-immunity-innate) wall the site in a granuloma, fibroblasts lay down scar, and the tissue is destroyed by its own defence.

**Example 15.7 (Sepsis).**

[Inflammation](#def-b3-innate-immunity-inflammation) confined to a splinter is a cure; the same reactions throughout the body are a catastrophe. When bacteria or their [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) reach the blood in quantity, [macrophages](#def-b3-innate-immunity-innate) everywhere release TNF and interleukin-1 at once: every vessel dilates and leaks, blood pressure collapses, clotting is activated in ten thousand capillaries and consumes the clotting factors, and the organs, starved of perfusion, fail — *septic shock*, which kills a quarter to a half of those it strikes, some eleven million people a year. A few micrograms of [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) injected into a volunteer produce fever, rigors and a fall in blood pressure within two hours; a mouse lacking TLR4 shrugs off a dose a hundred times lethal. The disease is the host’s response, and the [antibiotics](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-antibiotics) that kill the bacteria can make it worse for a few hours by releasing more endotoxin.

![Acute inflammation around a thorn scratch: redness and warmth from dilated vessels, swelling from leaked plasma, and the pain that keeps the limb still — the local response that, generalised to the whole body, is septic shock.](https://one-course.com/images/onecourse/chapters/biology-5/b3-innate-immunity/img-002bfda0bfbf.jpg)

*Acute [inflammation](#def-b3-innate-immunity-inflammation) around a thorn scratch: redness and warmth from dilated vessels, swelling from leaked plasma, and the pain that keeps the limb still — the local response that, generalised to the whole body, is septic shock.*

## 15.4 Killing

**Definition 15.8 (Phagocytosis and the respiratory burst).**

A phagocyte binds its prey through receptors for opsonins — C3b, and the constant regions of antibodies — or directly through pattern receptors, wraps it in membrane, and closes the *phagosome*, which fuses with granules and [lysosomes](https://one-course.com/books/biology/5/en/chapter/8-membrane-traffic-and-protein-sorting#def-b3-membrane-traffic-endocytosis). Killing is by several means at once. The *respiratory burst*: the enzyme *NADPH oxidase*, assembled on the phagosome membrane, pumps electrons onto oxygen to make superoxide, which becomes hydrogen peroxide, which myeloperoxidase turns, with chloride, into hypochlorite — bleach, at millimolar concentration inside a compartment a micrometre across. Nitric oxide from inducible NO synthase, which with superoxide gives peroxynitrite. Acid, to pH 5. Lysozyme, proteases, lactoferrin that starves the prey of iron, and defensins that puncture it. A [neutrophil](#def-b3-innate-immunity-innate) that cannot eat what it finds — a fungal hypha, a clump — can expel its own [chromatin](https://one-course.com/books/biology/5/en/chapter/1-chromatin-and-epigenetics#def-b3-chromatin-epigenetics-nucleosome) as a sticky net of DNA and granule proteins, a *[neutrophil](#def-b3-innate-immunity-innate) extracellular trap*, and die doing it. Children who inherit a defective NADPH oxidase (chronic granulomatous disease) suffer recurrent abscesses and granulomas from bacteria and fungi that ordinary phagocytes kill without difficulty: the burst is not optional.

**Definition 15.9 (Natural killer cells and interferon).**

Viruses hide inside cells, where [complement](#def-b3-innate-immunity-complement) and phagocytes cannot reach them. *[Natural killer cells](#def-b3-innate-immunity-innate)* patrol for cells that have stopped displaying MHC class I — the “missing self” of a cell whose viral or [tumour](https://one-course.com/books/biology/5/en/chapter/11-cancer-biology#def-b3-cancer-biology-hallmarks) occupant has switched off antigen presentation to escape T cells ([Chapter 16](https://one-course.com/books/biology/5/en/chapter/16-adaptive-immunity-and-vaccination#ch-b3-adaptive-immunity)) — and for stress proteins that infected and transformed cells put on their surface; inhibitory receptors for MHC I and activating receptors for the stress ligands are summed, and a cell that tips the balance is killed within minutes by perforin and granzymes injected into it, which trigger its [apoptosis](https://one-course.com/books/biology/5/en/chapter/10-cell-cycle-control-and-programmed-cell-death#def-b3-cell-cycle-apoptosis-apoptosis). *Type I interferons* ($\alpha$ and $\beta$) are made by any cell whose RIG-I or cGAS has detected viral nucleic acid; secreted, they bind receptors on neighbouring cells and, through the JAK–STAT pathway, induce hundreds of genes that put those cells into an *antiviral state*: a kinase that shuts down translation when it meets double-stranded RNA, a nuclease that degrades RNA, proteins that block viral entry and assembly, and more MHC I to show T cells what is inside. The cell that made the interferon may die; its neighbours are forewarned. Interferon was discovered by Isaacs and Lindenmann (1957) as the factor in the medium of virus-infected cells that made fresh cells resistant, and it is the reason a cell infected by one [virus](https://one-course.com/books/biology/5/en/chapter/13-virology#def-b3-virology-virus) resists a second.

**Method 15.10 (Measuring inflammation and phagocyte function).**

At the bedside: (1) the *[C-reactive protein](#prop-b3-innate-immunity-systemic)* in serum, by immunoassay — below $5\,\mathrm{mg}/\mathrm{L}$ at rest, tens in a viral infection, hundreds in bacterial sepsis, falling within days of effective treatment; (2) the [neutrophil](#def-b3-innate-immunity-innate) count, raised in bacterial infection, with immature forms released early from the marrow; (3) the erythrocyte sedimentation rate, a slow proxy for fibrinogen. For the phagocytes: (4) the *nitroblue tetrazolium* or dihydrorhodamine test, in which [neutrophils](#def-b3-innate-immunity-innate) stimulated in vitro reduce a dye if their [NADPH oxidase](#def-b3-innate-immunity-killing) works — the diagnosis of chronic granulomatous disease in a morning; (5) a chemotaxis assay, counting cells that migrate through a filter toward a [chemokine](#def-b3-innate-immunity-inflammation).

## 15.5 From innate to adaptive, and across life

**Proposition 15.11 (The dendritic cell’s decision).**

Adaptive immunity does not start itself. A *[dendritic cell](#def-b3-innate-immunity-innate)* in a tissue eats what it finds; if its pattern receptors are triggered — by microbe or by damage — it matures: it stops eating, migrates through the lymphatics to the draining lymph node, displays the peptides of what it ate on MHC molecules, and puts up *costimulatory* molecules (B7) and [cytokines](#def-b3-innate-immunity-inflammation) that tell a T cell recognising the peptide to respond, and how ([Chapter 16](https://one-course.com/books/biology/5/en/chapter/16-adaptive-immunity-and-vaccination#ch-b3-adaptive-immunity)). A T cell that sees its peptide on a [dendritic cell](#def-b3-innate-immunity-innate) without costimulation is switched off. Innate recognition thus decides whether an antigen is worth a response, and the [cytokines](#def-b3-innate-immunity-inflammation) the [dendritic cell](#def-b3-innate-immunity-innate) makes — decided by which pattern receptors fired — decide whether the response is aimed at viruses, bacteria or worms. An *adjuvant* is a pattern-receptor ligand added to a vaccine to supply this signal; the alum and the lipid nanoparticles of modern vaccines work by triggering it.

**Remark 15.12 (Innate immunity everywhere, and its memory).**

Every multicellular organism has [innate immunity](#def-b3-innate-immunity-innate), and plants, fungi and invertebrates have nothing else. Plants recognise flagellin and chitin with receptor kinases and mount a two-tier response ([Chapter 22](https://one-course.com/books/biology/5/en/chapter/22-molecular-plant-physiology-and-stress-responses#ch-b3-plant-molecular-physiology)); insects have Toll and antimicrobial peptides; even bacteria have [restriction enzymes](https://one-course.com/books/biology/5/en/chapter/6-genetic-engineering-and-biotechnology#def-b3-genetic-engineering-tools) and [CRISPR](https://one-course.com/books/biology/5/en/chapter/6-genetic-engineering-and-biotechnology#def-b3-genetic-engineering-crispr) ([Chapter 6](https://one-course.com/books/biology/5/en/chapter/6-genetic-engineering-and-biotechnology#ch-b3-genetic-engineering)). The dogma that [innate immunity](#def-b3-innate-immunity-innate) has no memory has softened: a monocyte that has met $\beta$-glucan or the BCG vaccine is epigenetically reprogrammed ([Chapter 1](https://one-course.com/books/biology/5/en/chapter/1-chromatin-and-epigenetics#ch-b3-chromatin-epigenetics)) to respond more strongly to unrelated microbes for months — *trained immunity*, which explains why BCG lowers infant mortality from infections other than tuberculosis. And the system’s excess is a disease of our time: sterile [inflammation](#def-b3-innate-immunity-inflammation) driven by uric acid crystals (gout), cholesterol crystals in the arterial wall (atherosclerosis), [amyloid](https://one-course.com/books/biology/5/en/chapter/7-structural-biology-of-proteins#def-b3-structural-biology-amyloid) in the brain, and the low-grade [inflammation](#def-b3-innate-immunity-inflammation) of obesity and old age.

## 15.6 Exercises

**Exercise 15.1 ★.**

List four [barriers](#def-b3-innate-immunity-innate) and five cell types of [innate immunity](#def-b3-innate-immunity-innate), with one function each.

**Solution of Exercise 15.1.**

[Barriers](#def-b3-innate-immunity-innate): skin keratin (mechanical), airway mucus and cilia (trapping and clearance), stomach acid (kills swallowed microbes), lysozyme and defensins in secretions (lyse and puncture), the commensal [microbiome](https://one-course.com/books/biology/5/en/chapter/14-microbiomes-and-symbioses#def-b3-microbiomes-symbiosis) (occupies niches). Cells: [neutrophils](#def-b3-innate-immunity-innate) (kill bacteria by [phagocytosis](#def-b3-innate-immunity-killing)), [macrophages](#def-b3-innate-immunity-innate) (eat, clean up, raise the alarm), [dendritic cells](#def-b3-innate-immunity-innate) (carry antigen to lymph nodes and start adaptive responses), mast cells (release histamine, inflame), [natural killer cells](#def-b3-innate-immunity-innate) (kill infected and transformed cells).

**Exercise 15.2 ★.**

What makes a molecule a good [pathogen-associated molecular pattern](#def-b3-innate-immunity-prr)? Give three examples and the receptor for each.

**Solution of Exercise 15.2.**

Shared by a whole class of microbes, essential to them (so it cannot be lost to escape), and absent from the host. [Lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) — TLR4; flagellin — TLR5; double-stranded RNA — TLR3 (and RIG-I in the cytosol); unmethylated [CpG](https://one-course.com/books/biology/5/en/chapter/1-chromatin-and-epigenetics#def-b3-chromatin-epigenetics-methylation) DNA — TLR9; [peptidoglycan](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) fragments — NOD proteins; $\beta$-glucan — dectin-1.

**Exercise 15.3 ★.**

Explain each of Celsus’s four signs by a mediator and a vascular or neural change.

**Solution of Exercise 15.3.**

Redness: arteriolar dilation by histamine, nitric oxide and prostaglandins. Heat: the same increased blood flow. Swelling: venular leak of plasma after endothelial contraction (histamine, C3a, C5a). Pain: bradykinin and prostaglandin E$_{2}$ sensitising nociceptors, plus pressure from the swelling.

**Exercise 15.4 ★.**

Name the three [complement](#def-b3-innate-immunity-complement) pathways, what starts each, and the three outcomes of C3 cleavage.

**Solution of Exercise 15.4.**

Classical: C1q binding antibody (or [C-reactive protein](#prop-b3-innate-immunity-systemic)) on a surface. Lectin: mannose-binding lectin on microbial sugars. Alternative: spontaneous C3 tick-over and C3b deposition on any unprotected surface. Outcomes: C3b opsonises for [phagocytosis](#def-b3-innate-immunity-killing); C3a and C5a inflame and recruit; C5b starts the [membrane attack complex](#def-b3-innate-immunity-complement) that lyses.

**Exercise 15.5 ★★.**

In the [complement](#def-b3-innate-immunity-complement) model with $k_{0} = 2$ per second, $a =
0.15\,\mathrm{s}^{-1}$ and $d = 0.05\,\mathrm{s}^{-1}$ on a microbe, how many C3b are deposited after $60\,\mathrm{s}$? After $90\,\mathrm{s}$? On a host cell with $a = 0.05$ and $d = 0.15$, what is the steady state?

**Solution of Exercise 15.5.**

$B = [k_{0}/(a-d)](e^{(a-d)t} - 1)$ with $a - d = 0.1$: at $60\,\mathrm{s}$, $20(e^{6} - 1) \approx 8000$; at $90\,\mathrm{s}$, $20(e^{9} - 1) \approx
1.6\times 10^{5}$. Host cell: $k_{0}/(d - a) = 2/0.1 = 20$.

**Exercise 15.6 ★★.**

Order the events of [extravasation](#def-b3-innate-immunity-inflammation), name the molecule class at each step, and predict the phenotype of a child whose [neutrophils](#def-b3-innate-immunity-innate) lack $\beta_{2}$ [integrins](#def-b3-innate-immunity-inflammation) (leukocyte adhesion deficiency).

**Solution of Exercise 15.6.**

Rolling on [selectins](#def-b3-innate-immunity-inflammation) (lectins binding carbohydrate); [chemokine](#def-b3-innate-immunity-inflammation) signalling that activates [integrins](#def-b3-innate-immunity-inflammation); firm adhesion of [integrins](#def-b3-innate-immunity-inflammation) to endothelial adhesion molecules (ICAM); transmigration between endothelial cells; chemotaxis along the gradient. Without $\beta_{2}$ [integrins](#def-b3-innate-immunity-inflammation) the [neutrophils](#def-b3-innate-immunity-innate) roll but never stop or cross: they pile up in the blood (very high counts), infections recur without pus forming, wounds heal badly, and the umbilical cord separates late.

**Exercise 15.7 ★★.**

A patient’s [neutrophils](#def-b3-innate-immunity-innate) fail the dihydrorhodamine test. What is the diagnosis, which reaction is missing, and which infections do you expect? Why are granulomas formed?

**Solution of Exercise 15.7.**

Chronic granulomatous disease: the [NADPH oxidase](#def-b3-innate-immunity-killing) is defective, so no superoxide, hydrogen peroxide or hypochlorite is made in the phagosome. Infections by organisms that destroy their own hydrogen peroxide (catalase-positive): *Staphylococcus aureus*, *Aspergillus*, *Burkholderia*, *Serratia*, *Nocardia*. Granulomas form because [macrophages](#def-b3-innate-immunity-innate) engulf microbes they cannot kill and wall them off, with continual recruitment, in a chronic lesion.

**Exercise 15.8 ★★.**

Explain missing-self recognition and predict what happens to a [tumour](https://one-course.com/books/biology/5/en/chapter/11-cancer-biology#def-b3-cancer-biology-hallmarks) cell that (a) loses MHC I to escape T cells, (b) keeps MHC I but displays stress ligands.

**Solution of Exercise 15.8.**

Inhibitory receptors count MHC I; activating receptors count stress ligands; the cell dies if activation outweighs inhibition. (a) Losing MHC I removes the inhibition: the [natural killer cell](#def-b3-innate-immunity-innate) kills it — the cost of escaping T cells. (b) With MHC I kept but stress ligands displayed, activation can still win and the cell is killed; [tumours](https://one-course.com/books/biology/5/en/chapter/11-cancer-biology#def-b3-cancer-biology-hallmarks) therefore often shed or suppress the stress ligands.

**Exercise 15.9 ★★.**

Why does a vaccine of pure protein induce little immunity, and what does an adjuvant add? Relate to Janeway’s argument.

**Solution of Exercise 15.9.**

A pure protein carries no pathogen pattern, so the [dendritic cells](#def-b3-innate-immunity-innate) that take it up do not mature, present it without costimulation, and the T cells that recognise it are switched off or ignore it. An adjuvant — alum, a lipid, a [Toll-like receptor](#def-b3-innate-immunity-prr) ligand — triggers pattern receptors, matures the [dendritic cell](#def-b3-innate-immunity-innate) and supplies the second signal. This is Janeway’s point: the adaptive system responds to antigen only when the innate system says the antigen came with a microbe.

**Exercise 15.10 ★★★.**

Fever costs $12\,\%$ of resting metabolism per degree and slows a bacterium’s doubling from $30\,\mathrm{min}$ at $37\,{}^{\circ}\mathrm{C}$ to $45\,\mathrm{min}$ at $40\,{}^{\circ}\mathrm{C}$. Over a day of infection, compute the bacterial population from $10^{4}$ with and without fever (ignoring killing), and the extra energy for a $8\,\mathrm{MJ}/\mathrm{d}$ person. Is fever worth it? What does the answer depend on?

**Solution of Exercise 15.10.**

Without fever, $48$ doublings: $10^{4}\times 2^{48} \approx 3\times
10^{18}$ (an absurdity that shows killing, not growth, decides the outcome). With fever, $32$ doublings: $4\times 10^{13}$ — a factor $2^{16} \approx 65\,000$ fewer bacteria for the [neutrophils](#def-b3-innate-immunity-innate) to face. Cost: $3\times 0.12\times 8 = 2.9\,\mathrm{MJ}$ a day, a large meal. Worth it when the pathogen is slowed and the host has reserves; not when the pathogen grows as well at $40\,{}^{\circ}\mathrm{C}$, or when the host is starving, or when the fever itself approaches dangerous temperatures.

**Exercise 15.11 ★★★.**

Some bacteria bind factor H to their surface; others cleave C3b or shed their capsule. Using [Theorem 15.4](#thm-b3-innate-immunity-complement), explain each as a change of $a$ or $d$, and say which is the most economical defence for the microbe.

**Solution of Exercise 15.11.**

Binding factor H recruits the host’s own regulator: $d$ rises above $a$ and the loop decays on the microbe as on a host cell. Cleaving C3b removes deposited convertase: again a rise in $d$. A capsule presents a surface on which convertase forms poorly, lowering $a$, and hides the C3b that is deposited from phagocyte receptors. Cheapest: one surface protein that binds factor H, which the host supplies free and which does the work.

**Exercise 15.12 ★★★.**

Argue, with the mechanisms of this chapter, why the same response is adaptive at a splinter and lethal in the bloodstream, and why drugs that block TNF help rheumatoid arthritis but raise the risk of tuberculosis.

**Solution of Exercise 15.12.**

At a splinter the dilation, leak and recruitment involve a few millilitres of vessels and deliver defence where it is needed; the same mediators released into the whole circulation dilate every vessel and leak every capillary, so the pressure collapses and clotting is triggered everywhere — the physiology is identical, the scale is lethal. TNF drives the synovial [inflammation](#def-b3-innate-immunity-inflammation) of rheumatoid arthritis, so blocking it relieves the disease; but TNF is also what keeps [macrophages](#def-b3-innate-immunity-innate) organised in the granulomas that contain dormant tubercle bacilli, and blocking it lets latent tuberculosis escape.

## 15.7 Problem: A Splinter

**Problem 15.1.**

Weekend problem — ten thousand bacteria under the skin raced against the neutrophils sent to meet them, coated with complement by the arithmetic of the loop, fought with fever at its metabolic price, and, in the bloodstream, turned into the physiology of shock, ending on the bacteria left after six hours, the C3b on each one and the cost of a day’s fever

Data: $10^{4}$ bacteria inoculated, doubling every $40\,\mathrm{min}$; [neutrophils](#def-b3-innate-immunity-innate) arrive from $1\,\mathrm{h}$ at $2\times 10^{4}$ per hour, each killing $20$ bacteria then dying. [Complement](#def-b3-innate-immunity-complement): $k_{0} = 1$ per second per bacterium, $a - d = 0.08\,\mathrm{s}^{-1}$ on the bacteria, $d - a =
0.1\,\mathrm{s}^{-1}$ on host cells; a bacterium’s surface holds at most $2\times 10^{6}$ C3b. Fever: $+2\,{}^{\circ}\mathrm{C}$ costs $24\,\%$ of an $8\,\mathrm{MJ}/\mathrm{d}$ metabolism and lengthens the bacterial doubling time to $60\,\mathrm{min}$. Sepsis: $10^{9}$ bacteria in $5\,\mathrm{L}$ of blood, $3\times 10^{6}$ [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) molecules per bacterium; TLR4 signalling saturates at $10^{-9}$ mol/L of [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope).

**Part I — The race.**

1. How many bacteria at $1\,\mathrm{h}$ , when the first [neutrophils](#def-b3-innate-immunity-innate) arrive, if none have been killed?
2. Between $1\,\mathrm{h}$ and $2\,\mathrm{h}$ , how many [neutrophils](#def-b3-innate-immunity-innate) arrive and how many bacteria can they kill? Compare with the bacterial growth in that hour from the count of question 1.
3. Continue hour by hour (growth, then killing at the end of each hour) to $6\,\mathrm{h}$ . When does the population peak, and how many remain at $6\,\mathrm{h}$ ?
4. Repeat with a [neutrophil](#def-b3-innate-immunity-innate) arrival delayed to $3\,\mathrm{h}$ . What happens by $6\,\mathrm{h}$ ? Comment on the value of speed.
5. How many dead [neutrophils](#def-b3-innate-immunity-innate) accumulate by the time the bacteria are gone in question 3? What is pus, and why does it need to be cleared?
6. A person with a tenth of the normal [neutrophil](#def-b3-innate-immunity-innate) count (neutropenia after chemotherapy): recompute question 3 and explain why such patients are given [antibiotics](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-antibiotics) at the first fever.

**Part II — The coat.**

7. From the theorem, how many C3b are deposited on one bacterium after $30\,\mathrm{s}$ , $60\,\mathrm{s}$ and $120\,\mathrm{s}$ ?
8. When does the surface saturate?
9. On a host cell beside it, what is the steady-state number of C3b?
10. The bacterium acquires a capsule that halves $a$ , so that $a -  d = 0.03$ . Recompute the C3b at $120\,\mathrm{s}$ . What does the capsule buy?
11. How many C3b does the whole inoculum of $10^{4}$ bacteria carry at saturation, and what fraction is that of the $2\times 10^{16}$ C3 molecules in a litre of plasma?
12. A patient lacks C3. Which pathways are affected, and what infections follow? A patient lacks C9: why is the phenotype milder, and confined to one genus?

**Part III — Fever.**

13. How much extra energy does two days of fever at $+2\,{}^{\circ}\mathrm{C}$ cost, in megajoules and in grams of fat ( $38\,\mathrm{kJ}/\mathrm{g}$ )?
14. Redo question 1 at fever temperature: how many bacteria at $1\,\mathrm{h}$ ? By what factor has fever reduced the population the [neutrophils](#def-b3-innate-immunity-innate) meet?
15. In the model of question 3, with the longer doubling time, when are the bacteria gone?
16. [C-reactive protein](#prop-b3-innate-immunity-systemic) rises from $1\,\mathrm{mg}/\mathrm{L}$ to $200\,\mathrm{mg}/\mathrm{L}$ in two days. With a plasma volume of $3\,\mathrm{L}$ and a molecular mass of $115\,\mathrm{kDa}$ , how many molecules has the liver made, and how many per second?
17. Antipyretic drugs block prostaglandin synthesis. What do they do to the set point, the comfort of the patient and, by the numbers above, to the infection?
18. Why is a fever of $41\,{}^{\circ}\mathrm{C}$ dangerous when $39\,{}^{\circ}\mathrm{C}$ is not, and what stops the set point rising indefinitely?

**Part IV — Shock.**

19. [Lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) molecules in the blood of the septic patient, and their concentration in mol/L.
20. Compare with the saturating concentration for TLR4. Are the body’s [macrophages](#def-b3-innate-immunity-innate) all activated?
21. Each of the body’s $10^{11}$ [macrophages](#def-b3-innate-immunity-innate) releases $1000$ TNF molecules a second for an hour. How many moles of TNF, and what concentration in $15\,\mathrm{L}$ of extracellular fluid? (TNF acts at $1 \times 10^{-11}\,\mathrm{mol}/\mathrm{L}$ .)
22. Explain the fall in blood pressure and the failure of the kidneys from the local mechanisms of [inflammation](#def-b3-innate-immunity-inflammation) .
23. The [antibiotic](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-antibiotics) given at admission kills the bacteria within an hour. Why may the patient worsen before improving, and what limits the usefulness of anti-TNF antibodies in sepsis?
24. A mouse strain lacks TLR4. Predict its response to injected [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) and to a live [Gram-negative](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) infection, and explain the apparent paradox.
25. Summarise: the bacteria remaining at $6\,\mathrm{h}$ (question 3), the C3b on one bacterium at $120\,\mathrm{s}$ (question 7), and the cost of two days’ fever (question 13).

**Solution of Problem 15.1.**

**1.** One hour is $1.5$ doublings: $10^{4}\times 2^{1.5} \approx
2.8\times 10^{4}$. **2.** $2\times 10^{4}$ [neutrophils](#def-b3-innate-immunity-innate) kill up to $4\times 10^{5}$; the bacteria grow only from $2.8\times 10^{4}$ to $8\times 10^{4}$: killing outstrips growth fivefold. **3.** Hour 2: $8\times 10^{4}$ before the kill, none after. The population peaks at about $8\times 10^{4}$ near $2\,\mathrm{h}$ and is zero from then on; none remain at $6\,\mathrm{h}$. **4.** Arrival at $3\,\mathrm{h}$: $10^{4}\times 2^{4.5} = 2.3\times
10^{5}$ then. Hour 4: $6.4\times 10^{5} - 4\times 10^{5} = 2.4\times
10^{5}$; hour 5: $6.8\times 10^{5} - 4\times 10^{5} = 2.8\times 10^{5}$; hour 6: $7.9\times 10^{5} - 4\times 10^{5} = 3.9\times 10^{5}$ and rising — the [neutrophils](#def-b3-innate-immunity-innate) no longer keep up, and an abscess forms. Two hours’ delay turns a cure into a chronic infection. **5.** $8\times 10^{4}/20 = 4000$ [neutrophils](#def-b3-innate-immunity-innate) die killing, plus the $2\times 10^{4}$ that arrived and die anyway within a day. Pus is dead [neutrophils](#def-b3-innate-immunity-innate), dead bacteria and liquefied tissue; [macrophages](#def-b3-innate-immunity-innate) clear it by eating the corpses, or it must drain. **6.** Arrivals $2000$ an hour, kill $4\times 10^{4}$: hour 2, $8\times 10^{4} - 4\times 10^{4} = 4\times 10^{4}$; hour 3, $1.1\times
10^{5} - 4\times 10^{4} = 7\times 10^{4}$; hour 4, $2\times 10^{5} -
4\times 10^{4} = 1.6\times 10^{5}$ — growing without limit. The patient cannot contain a trivial inoculum, so [antibiotics](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-antibiotics) must do the killing from the first sign. **7.** $B = 12.5(e^{0.08t} - 1)$: $30\,\mathrm{s}$, $125$; $60\,\mathrm{s}$, $1500$; $120\,\mathrm{s}$, $1.8\times 10^{5}$. **8.** $e^{0.08t} = 1.6\times 10^{5}$: $t = 12/0.08 = 150\,\mathrm{s}$. **9.** $k_{0}/(d - a) = 10$. **10.** $B(120) = 33(e^{3.6} - 1) \approx 1200$, $150$ times fewer. The capsule buys minutes — time to multiply, and protection until antibodies arrive to start the classical pathway on the capsule itself. **11.** $10^{4}\times 2\times 10^{6} = 2\times 10^{10}$ C3b: one millionth of the plasma’s C3. **12.** Without C3 all three pathways stop at their common step: no [opsonisation](#def-b3-innate-immunity-complement), no [anaphylatoxins](#def-b3-innate-immunity-complement), no lysis — severe recurrent infections with encapsulated bacteria. Without C9 only the terminal pore is lost; [opsonisation](#def-b3-innate-immunity-complement) and [inflammation](#def-b3-innate-immunity-inflammation) work, and the phenotype is recurrent *Neisseria* infections, the one genus that phagocytes control poorly and lysis controls well. **13.** $2\times 0.24\times 8 = 3.8\,\mathrm{MJ}$, about $100\,\mathrm{g}$ of fat. **14.** One doubling in the hour: $2\times 10^{4}$ instead of $2.8\times 10^{4}$, a factor $1.4$. **15.** Hour 2: $4\times 10^{4}$ before the kill, none after — gone at $2\,\mathrm{h}$, as before; fever’s contribution matters when the [neutrophil](#def-b3-innate-immunity-innate) supply is marginal, as in questions 4 and 6. **16.** $199\,\text{mg/L}\times 3\,\text{L} = 0.6\,\mathrm{g}$; $0.6/
115\,000 = 5.2\times 10^{-6}$ mol $= 3.1\times 10^{18}$ molecules; over $172\,800\,\mathrm{s}$, $1.8\times 10^{13}$ a second. **17.** They lower the set point back toward $37\,{}^{\circ}\mathrm{C}$, the patient feels better, and the bacteria double a little faster; in this model the [neutrophils](#def-b3-innate-immunity-innate) still win, and the evidence that antipyretics worsen ordinary infections is weak. **18.** Above about $41\,{}^{\circ}\mathrm{C}$ proteins begin to denature, enzymes fail and neurons misfire (seizures); $42\,{}^{\circ}\mathrm{C}$ is lethal. The set point is held below that by cryogens — interleukin-10, vasopressin, glucocorticoids — and by the ceiling of prostaglandin action in the hypothalamus. **19.** $10^{9}\times 3\times 10^{6} = 3\times 10^{15}$ molecules $= 5\times 10^{-9}$ mol in $5\,\mathrm{L}$: $1 \times 10^{-9}\,\mathrm{mol}/\mathrm{L}$. **20.** Equal to the saturating concentration: every [macrophage](#def-b3-innate-immunity-innate) in the body is maximally activated at once. **21.** $10^{11}\times 1000\times 3600 = 3.6\times 10^{17}$ molecules $= 6\times 10^{-7}$ mol; in $15\,\mathrm{L}$, $4 \times 10^{-8}\,\mathrm{mol}/\mathrm{L}$ — four thousand times the active concentration. **22.** Every arteriole dilates and every venule leaks: the blood volume pools in the widened vessels and escapes into the tissues, so the pressure falls; the kidneys, underperfused, stop filtering; and clotting triggered in thousands of capillaries blocks them and consumes the clotting factors. **23.** Killed [Gram-negatives](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) release their whole [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) at once, a bolus for TLR4, so the [cytokine](#def-b3-innate-immunity-inflammation) surge can worsen for hours. Anti-TNF fails because by the time of shock the cascade has passed TNF — interleukin-1, interleukin-6 and coagulation are already running — and because TNF is needed to control the bacteria: timing, not the target, is the problem. **24.** Injected [lipopolysaccharide](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) does nothing to the TLR4-null mouse, which survives doses lethal to normal mice; a live [Gram-negative](https://one-course.com/books/biology/5/en/chapter/12-bacteriology-growth-physiology-and-genetics#def-b3-bacteriology-envelope) infection kills it, because it cannot detect the bacteria early and mount the [inflammation](#def-b3-innate-immunity-inflammation) that contains them. The paradox dissolves: the detector that causes the shock is the detector that provides the defence. **25.** No bacteria remain at $6\,\mathrm{h}$ (all killed by $2\,\mathrm{h}$); about $1.8\times 10^{5}$ C3b per bacterium at $120\,\mathrm{s}$; two days’ fever costs $3.8\,\mathrm{MJ}$, some $100\,\mathrm{g}$ of fat.