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Biology · পরিভাষা

Secondary structure কী?

অন্য নাম: alpha helix · beta sheet

Definition 12.5 University Biology — Year 1 · অধ্যায় 12 — Amino Acids and Proteins

The secondary structure of a protein is the local, regular folding of its backbone, held by hydrogen bonds between backbone C=O and N–H groups. Two patterns dominate. The α\alpha helix: a right-handed coil of 3.6 residues per turn, rising 0.15 nm0.15\,\mathrm{nm} per residue (0.54 nm0.54\,\mathrm{nm} per turn), each C=O bonded to the N–H four residues ahead, with the side chains pointing outward. The β\beta sheet: chains stretched almost fully (0.35 nm0.35\,\mathrm{nm} per residue) and laid side by side, parallel or antiparallel, bonded between neighbouring strands, with side chains alternating above and below the sheet. Between them, turns and loops reverse the chain’s direction. Proline, whose ring locks ϕ\phi, breaks helices; glycine, with no side chain, allows turns that no other residue can make.

The Ramachandran plot: the combinations of  and  that a residue can adopt. Two large allowed regions correspond to the  sheet and the right-handed  helix; most of the plane is forbidden by collisions between atoms.
The Ramachandran plot: the combinations of ϕ\phi and ψ\psi that a residue can adopt. Two large allowed regions correspond to the β\beta sheet and the right-handed α\alpha helix; most of the plane is forbidden by collisions between atoms.
Linus Pauling (1901–1994), who deduced the  helix and the  sheet in 1951 from the planarity of the peptide bond and the geometry of hydrogen bonds, before either had been seen in a protein. Photograph: Nobel Foundation, 1962, public domain.
Linus Pauling (1901–1994), who deduced the α\alpha helix and the β\beta sheet in 1951 from the planarity of the peptide bond and the geometry of hydrogen bonds, before either had been seen in a protein. Photograph: Nobel Foundation, 1962, public domain.

উদাহরণ

Example 12.6 (Helix and sheet by the numbers)

A membrane-spanning α\alpha helix must cross 3 nm3\,\mathrm{nm} of hydrophobic core: 3/0.15=203/0.15 = 20 residues, and indeed the transmembrane segments of Chapter 7 are runs of about twenty hydrophobic residues. A β\beta strand of the same length spans 7 nm7\,\mathrm{nm}: silk fibroin is stacked antiparallel sheets of glycine and alanine, and a silk thread is stronger than steel of the same weight because the covalent backbones lie along the fibre.

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